Index

_

__init__() (soursop.sspre.SSPRE method) (soursop.sstrajectory.SSTrajectory method)

C

calculate_all_CA_distances() (soursop.ssprotein.SSProtein method)

ccap() (soursop.ssprotein.SSProtein method) compute_random_coil_chemical_shifts() (in module soursop.ssnmr)

G

generate_PRE_profile() (soursop.sspre.SSPRE method) get_all_SASA() (soursop.ssprotein.SSProtein method) get_amino_acid_sequence() (soursop.ssprotein.SSProtein method) get_angle_decay() (soursop.ssprotein.SSProtein method) get_angles() (soursop.ssprotein.SSProtein method) get_asphericity() (soursop.ssprotein.SSProtein method) get_CA_index() (soursop.ssprotein.SSProtein method) get_clusters() (soursop.ssprotein.SSProtein method) get_contact_map() (soursop.ssprotein.SSProtein method) get_D_vector() (soursop.ssprotein.SSProtein method) get_dihedral_mutual_information() (soursop.ssprotein.SSProtein method) get_distance_map() (soursop.ssprotein.SSProtein method) get_end_to_end_distance() (soursop.ssprotein.SSProtein method) get_end_to_end_vs_rg_correlation() (soursop.ssprotein.SSProtein method) get_gyration_tensor() (soursop.ssprotein.SSProtein method) get_hydrodynamic_radius() (soursop.ssprotein.SSProtein method) get_inter_residue_atomic_distance() (soursop.ssprotein.SSProtein method) get_inter_residue_COM_distance() (soursop.ssprotein.SSProtein method) get_inter_residue_COM_vector() (soursop.ssprotein.SSProtein method) get_interchain_contact_map() (soursop.sstrajectory.SSTrajectory method) get_interchain_distance() (soursop.sstrajectory.SSTrajectory method) get_interchain_distance_map() (soursop.sstrajectory.SSTrajectory method) get_internal_scaling() (soursop.ssprotein.SSProtein method)

get_internal_scaling_RMS() (soursop.ssprotein.SSProtein method) get_local_collapse() (soursop.ssprotein.SSProtein method) get_local_heterogeneity() (soursop.ssprotein.SSProtein method) get_local_to_global_correlation() (soursop.ssprotein.SSProtein method) get_multiple_CA_index() (soursop.ssprotein.SSProtein method) get_overall_asphericity() (soursop.sstrajectory.SSTrajectory method) get_overall_hydrodynamic_radius() (soursop.sstrajectory.SSTrajectory method) get_overall_radius_of_gyration() (soursop.sstrajectory.SSTrajectory method) get_overlap_concentration() (soursop.ssprotein.SSProtein method) get_polymer_scaled_distance_map() (soursop.ssprotein.SSProtein method) get_Q() (soursop.ssprotein.SSProtein method) get_radius_of_gyration() (soursop.ssprotein.SSProtein method) get_regional_SASA() (soursop.ssprotein.SSProtein method) get_residue_atom_indices() (soursop.ssprotein.SSProtein method) get_residue_COM() (soursop.ssprotein.SSProtein method) get_residue_mass() (soursop.ssprotein.SSProtein method) get_RMSD() (soursop.ssprotein.SSProtein method) get_scaling_exponent() (soursop.ssprotein.SSProtein method) get_secondary_structure_BBSEG() (soursop.ssprotein.SSProtein method) get_secondary_structure_DSSP() (soursop.ssprotein.SSProtein method) get_sidechain_alignment_angle() (soursop.ssprotein.SSProtein method) get_site_accessibility() (soursop.ssprotein.SSProtein method) get_t() (soursop.ssprotein.SSProtein method)

L

length() (soursop.ssprotein.SSProtein method) (soursop.sstrajectory.SSTrajectory method)

M

module soursop.ssnmr

N

n_frames() (soursop.ssprotein.SSProtein method) (soursop.sstrajectory.SSTrajectory method)

n_proteins() (soursop.sstrajectory.SSTrajectory method) n_residues() (soursop.ssprotein.SSProtein method) ncap() (soursop.ssprotein.SSProtein method)

P

print_residues() (soursop.ssprotein.SSProtein method)

R

reset_cache() (soursop.ssprotein.SSProtein method)

resid_with_CA() (soursop.ssprotein.SSProtein method) residue_index_list() (soursop.ssprotein.SSProtein method)

S

soursop.ssnmr module

SSPRE (class in soursop.sspre) SSProtein (class in soursop.ssprotein), [1] SSTrajectory (class in soursop.sstrajectory)